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Shopify vs Amazon: fees and fit

Figures checked 2026-10-14 on www.shopify.com, sell.amazon.com and sellercentral.amazon.com. US pricing.

Cost breakdown

Cost itemShopifyAmazon US
Monthly / planBasic $29 · Grow $79 · Advanced $299 per month billed yearly ($39 / $105 / $399 monthly)Professional $39.99/month, or Individual $0.99 per item sold
Selling / referral feeNoneCategory referral fee, e.g. 15% for most categories, 8% consumer electronics, 12% automotive
Payment processingShopify Payments 2.9% / 2.7% / 2.5% + 30¢; +1% international cardsIncluded in the referral fee
FulfillmentYou, a 3PL or a dropshipping supplierFBA fee by size and weight (rate card), +3.5% fuel & logistics surcharge; or ship yourself (FBM)
TrafficYou bring it (ads, SEO, social)Built-in marketplace demand; ads optional but common
Customer dataYours: emails, remarketing, repeat ordersLimited; Amazon owns the customer relationship

Run one product through both channels in the Amazon vs Shopify profit calculator.

Shopify pros

  • No referral fee — keep more of each sale
  • You own the brand, the data and the customer
  • Full control over pricing, bundles and checkout

Cons

  • No built-in traffic; ad costs can eat the savings
  • You run fulfillment and customer service

Amazon pros

  • Huge existing buyer demand
  • FBA handles storage, shipping and returns
  • Prime badge builds trust fast

Cons

  • Referral + FBA fees often take a large share of the price
  • Price competition and account-health risk
  • Little access to customer data

Who each fits

Amazon fits sellers with a product people already search for, who want demand and fulfillment handled and can live with lower margins.

Shopify fits brands with an audience or ad skills, repeat-purchase products, and a need to own customer data.

Many sellers do both: Amazon for demand, Shopify for brand and repeat buyers.

FAQ

Is Shopify cheaper than Amazon?

Per sale, usually yes: Shopify charges no referral fee, while Amazon takes 15% in most categories. But on Shopify you pay for traffic yourself, so compare profit after ad costs.

Can I sell on both?

Yes. Shopify can connect to Amazon through apps; keep inventory and pricing rules in sync.

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